Publications

Selected Publications

2017

Jeong HW, Hernández-Rodríguez B, Kim J, Kim KP, Enriquez-Gasca R, Yoon J, Adams S, Schöler HR, Vaquerizas JM# & Adams RH#. 2017. Transcriptional regulation of endothelial cell behavior during sprouting angiogenesis. Nature Communications, 8:726
PubMed|Publisher

Hug CB, Grimaldi AG, Kruse KVaquerizas JM. 2017. Chromatin Architecture Emerges during Zygotic Genome Activation Independent of Transcription. Cell, 169:216–228
PubMed|Publisher|Full text|Preview|Research highlight

Langen UH, Pitulescu ME, Kim JM, Enriquez-Gasca R, Sivaraj KK, Kusumbe AP, Singh A, Di Russo J, Bixel MG, Zhou B, Sorokin L, Vaquerizas JM & Adams RH. 2017. Cell–matrix signals specify bone endothelial cells during developmental osteogenesis. Nature Cell Biology, 19:189-201
PubMed|Publisher

2016

Vaquerizas JM & Torres-Padilla ME. 2016. Developmental biology: Panoramic views of the early epigenome. Nature, 537:494-496
PubMed|Publisher|Podcast

Kruse* K, Hug* CB, Hernández-Rodríguez BVaquerizas JM. 2016. TADtool: Visual Parameter Identification for TAD-calling Algorithms. Bioinformatics, doi:10.1093/bioinformatics/btw368
PubMed|Publisher|Software

Lecanda A, Nilges BS, Sharma P, Nedialkova DD, Schwarz J, Vaquerizas JM & Leidel SA. 2016. Dual randomization of oligonucleotides to reduce the bias in ribosome-profiling libraries. Methods, pii: S1046-2023(16)30220-1
PubMed|Publisher

2015

Ishiuchi T, Enriquez-Gasca R, Mizutani E, Bošković A, Ziegler-Birling C, Rodriguez-Terrones D, Wakayama T, Vaquerizas JM & Torres-Padilla ME. 2015. Early embryonic-like cells are induced by downregulating replication-dependent chromatin assembly. Nature Structural & Molecular Biology, 22:662-671
PubMed|Publisher|News&Views|Media coverage|Media coverage

2013

Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T & Taipale J. 2013. DNA-binding specificities of human transcription factors. Cell, 152:327-39
PubMed|Publisher

2012

The ENCODE Project Consortium (including Vaquerizas JM). 2012. An Integrated Encyclopedia of DNA Elements in the Human Genome. Nature, 489:57-74.
PubMed|Publisher|Journal cover|Media coverage|Media coverage|Website

Conrad T*, Cavalli FM*, Vaquerizas JM, Luscombe NM & Akhtar A. 2012. Drosophila Dosage Compensation Involves Enhanced Pol II Recruitment to Male X-Linked Promoters. Science, 337:742-6.
PubMed|Publisher

Lam KC*, Mühlpfordt F*, Vaquerizas JM*, Raja SJ, Holz H, Luscombe NM, Manke T & Akhtar A. 2012. The NSL Complex Regulates Housekeeping Genes in Drosophila. PLoS Genetics, 8:e1002736.
PubMed|Publisher

2010

Vaquerizas JM*, Suyama R*, Kind J*, Miura K, Luscombe NM & Akhtar A. 2010. Nuclear pore proteins Nup153 and Megator define transcriptionally active regions in the Drosophila genome. PLoS Genetics, 6:e1000846.
PubMed|Publisher|Perspective|Epigenetics 2010

2009

Vaquerizas JM, Kummerfeld SK, Teichmann SA & Luscombe NM. 2009. A census of human transcription factors: function, expression and evolution. Nature Reviews Genetics, 10:252-63.
PubMed|Publisher|Journal cover

2008

Kind J*, Vaquerizas JM*, Gebhardt P, Gentzel M, Luscombe NM, Bertone P & Akhtar A. 2008. Genome-wide analysis reveals MOF as a key regulator of dosage compensation and gene expression in Drosophila. Cell, 133:813-828.
PubMed|Publisher|Perspective|NRG Research Highlight|Media coverage|Media coverage

* indicates joint first authors

 

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